Public Health Informatics

 View Only
  • 1.  Ideas around a paper requisition form OCR/scanning tool

    Posted 10-25-2023 05:37 PM

    Hello all -

    We are looking for options for implementing an OCR/paper scanning tool to convert paper requisition forms into electronic order info for communicable disease testing. 

    • I would be curious if folks could share what tools they might be using in their labs to scan paper orders?
    • I'm also curious if you can share a high-level overview of how you review scanned info -- do you have a modular application (external to your LIMS) or are these data imported into your LIMS for a review? Or is there or is there another option for doing this? 

    Thank you very kindly!

    -Laurel



    ------------------------------
    Laurel Boyd
    Lab Data Systems Informatician
    Oregon State Public Health Laboratory
    Hillsboro OR
    (503) 693-4100
    ------------------------------


  • 2.  RE: Ideas around a paper requisition form OCR/scanning tool

    Posted 10-26-2023 09:33 AM
    I feel like I watched a presentation about a year ago by someone who was using AI to do this exact thing.  Unfortunately, I just searched my calendar and I cannot find it.

    As far as our process for reviewing data entered off paper reqs.

    1.  Data is entered off the paper req and then a barcoded label is placed on it.   A data entry QC task is added to the sample in the LIMS.
    2.  We have hp scanjet 7500 scanners and use the out of the box software to read the barcode and save it to a folder with the file name read  from the sample ID off the barcode.
    3.  There is a function in our LIMS that allows us to associate the folder with a specific document type.  The function then automatically uploads the document to the sample based on the file name in the LIMS.
    4. Reviewers print a report in the LIMS containing all the demographic data entered on the sample.
    5.  They compare the paper forms and the printed report and then complete the QC task.  The sample will not report until this task is complete

    --
    Justin Nucci, MSPH
    (he/him)
    Laboratory Data Systems Program Manager
    CO Dept of Public Health and Environment
    8100 Lowry Blvd
    Denver, CO 80230
    Provide feedback to the lab using this survey.
    303-692-3689







  • 3.  RE: Ideas around a paper requisition form OCR/scanning tool

    This message was posted by a user wishing to remain anonymous
    Posted 10-26-2023 09:43 AM
    This post was removed


  • 4.  RE: Ideas around a paper requisition form OCR/scanning tool

    Posted 10-26-2023 10:07 AM
    Hi Laurel,


    I apologize for my previous post.
    This is how we do things in Alabama.

    When samples are received into LIMS, a barcode label containing the sampleID, workorderID, and chain of custody is attached. We created a report in LIMS that prints the patient demographics, insurance information, and provider details after the Data Entry team entered all of the patient demographics. After the report has been verified, they take the complete stack and scan it with a Sharp desktop scanner or a Xerox copier. Umango and Scan Flow are the programs we use to rename scanned PDF files using Labsampleid. The process of taking all the scanned PDFs and attaching them to samples in LIMS is a scheduled job in LIMS.

    Thank You
    Neelima
    Bureau of Information Technology
    Alabama Dept. of Public Health
    334-290-6181





  • 5.  RE: Ideas around a paper requisition form OCR/scanning tool

    Posted 10-26-2023 11:01 AM

    We have stopped using paper requisitions in favor of online ordering, but when we did we used a software called Teleform that is supported by a company called Optiform.

    Forms can be designed in the software (or imported), and each field on the form is made into a data element.  The forms are scanned in batches using the form template.  Then the user is able to verify the data in the software and correct any mistakes the software made in interpreting the writing on the form (the software pulls up an image of the form with the data overlaid on it and the user tabs through the fields correcting any mistakes they see).  Once the batch is verified, the software converts the data into HL7 order messages that are transmitted to our LIS.  There is also scripting as part of the form evaluation that can do various things with the data.

     

    The software has other uses as well.  There are different modules that can be added to the license.  One is called automerge publisher.  This allows you to create forms and use a data file to fill them in.  Then the filled-in forms can be emailed to recipients.  Or you can create forms and have it autonumber them for you.  We used this when we had to have a unique requisition number on our forms for a specific reference lab.

     

    Additionally, you can set it to monitor a folder and have it pick up files from there to process and send either the data or an image of the form somewhere.  We use this for lab reports we download as a PDF file from an outside reference lab.  It is able to separate the batch into the individual reports, find the sample ID on the form and use it as the file name, then put that file in a folder where our LIS can pick it up and attach it to the order as an image.

     

    Feel free to reach out with questions or for a demo of the process.

     

     

    Kim Varvel, MLS(ASCP) CM
    Data Coordinator/CLSp

    Laboratory Services Bureau
    PO Box 4369 | 1400 Broadway | Helena MT  59620-2951
    406.444.4115 | fax 406.444.5527

    kvarvel@mt.gov

     

     

     

     






  • 6.  RE: Ideas around a paper requisition form OCR/scanning tool

    Posted 10-26-2023 07:17 PM

     

    Are these typed forms or hand-written?  Hand-written are far harder to convert. 

    Are they in PDF files?  How many pieces of paper are you scanning?

     

    We use a Fujitsu scanner and it comes with Paper Stream Capture.  It can do some of this.  I also handles bar codes.

     

    Thanks,

     

    James A. Davis

    Programmer/Analyst IV

    Department of Health

    Public Health Laboratories

     

    Phone 907-334-2152  Mobile 907-744-394

    Web health.alaska.gov/dph/Labs/Pages/default.aspx  Email james.davis@alask.gov

    5455 Dr. Martin Luther King Jr.

    Anchorage, AK 99507

     

     

     






  • 7.  RE: Ideas around a paper requisition form OCR/scanning tool

    Posted 10-27-2023 12:09 PM

    Hi!

    Apologies for the delay – ColLaborate and my new email address didn't like each other for a moment there...

     

    James, they are hand-written and I want to say mostly associated with outbreaks (which means numbers vary seasonally and with disease strains). I'm curious where your data land when you scan them? (Do you import directly into your LIMS or a middleman application?)

     

    And, thank you all for sharing your ideas and expertise! ��

    Neelima, I also had a steep learning curve for posting! (And responding!)

     

    Let's see – in the interest of transparency I'll share back with you what I have learned (some folks responded directly):

     

    • Several LIMS can be extended to support paper form workflows, including labeling and attaching paper forms into the LIMS. I'm particularly loving the chain of custody capabilities many of you highlight.
    • Many LIMS have moved away from using paper entirely. (I have a million questions here about what you use when the internet is down?)
    • Options for text recognition of handwritten info on paper req forms include:
      • EasyOCR
      • Handprint
      • TrOCR
      • TensorFlor

     

    Thank you all!

    Laurel

     

     

    Laurel Boyd, MPH

    Laboratory Data Systems Informatician

    OREGON HEALTH AUTHORITY
    Public Health Division

    Oregon State Public Health Laboratory

    *New* email: Laurel.Boyd@oha.oregon.gov 

    Cell: 971-470-5539 | Fax: 503-693-5602

    Pronouns: She, Her, Hers