Public Health Informatics

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  • 1.  Community Call for LIMS Accessioning and Reporting Insights

    Posted 07-31-2025 04:14 PM

    Hi everyone,

    We had a PHL reach out recently asking about how other labs handle LIMS data issues--specifically, they were are curious how other PHLs deal with LIMS accessioning and reporting related to diagnostic testing (Dx) versus surveillance testing (non-Dx). This is really to ensure that for CLIA purposes, Dx results are separate from non-Dx ones and will make future CLIA inspections a lot more efficient in terms of focusing solely on Dx items.

    Would love to hear if the community has any thoughts around this to share! 

    Thanks, 

    Rachel 



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    Rachel Shepherd
    Association of Public Health Laboratories
    Bethesda MD
    (240) 485-2747
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  • 2.  RE: Community Call for LIMS Accessioning and Reporting Insights

    Posted 08-01-2025 10:08 AM

    Hi,

     

    In our lab we have created a set of surveillance versions of the tests that we do both for. These do not report a result to the provider and are not billed. They have a different test code than the Dx version of the test which makes it easy to separate the data out.

     

    Hope this helps,

    -Josh-

     

    Joshua Weiner, MS

    Laboratory Information System Specialist

    (Pronouns: He, him, his)

    City of Milwaukee Health Department 

    Zeidler Municipal Building | 841 N. Broadway, Room 205 | Milwaukee, WI 53202

    Office: (414) 286-3526 | Direct: (414) 286-3532 | jweine@milwaukee.gov | www.milwaukee.gov/health | Facebook | Twitter | Instagram  

    b8f078e1-2492-404d-b4d4-8fc584b61311

     

    The City of Milwaukee is subject to Wisconsin Statutes related to public records. Unless otherwise exempted from the public records law, senders and receivers of City of Milwaukee e-mail should presume that e-mail is subject to release upon request, and is subject to state records retention requirements.





  • 3.  RE: Community Call for LIMS Accessioning and Reporting Insights

    Posted 08-01-2025 10:58 AM

    We have different order choices for diagnostic versus surveillance/confirmation testing (For example, "Enteric culture" vs "E coli confirmation", or "Influenza A/B PCR" vs "Influenza Surveillance").  The billing codes (CPT codes) we use in the LIMS indicate to our billing system whether the order choices are billable to the facility or to the surveillance program.  We use a suffix at the end of the CPT code in the LIMS, which gets converted in the billing system.  For surveillance testing, if the test method is FDA-cleared, we report the results back to the facility.  If the test method is not FDA-cleared (such as whole genome sequencing), the results are not reported back to the facility (we can designate a test or order choice as non-reportable in the LIMS).  Any time the testing is for a reportable condition, we report the results via HL7 to our state public health system. Our LIMS allows reporting to public health even if the test is not reportable to the facility; however, some non-FDA cleared results are not reported to the public health electronically to prevent the results from being accessed by local jurisdictions.  For those things, we create reports in our LIMS that can be scheduled and sent via email, placed in a network directory, or run ad-hoc).  If our state epidemiologists want us to perform diagnostic testing for outbreak/surveillance purposes, they coordinate with the facility and our lab to get the sample(s) to us.  They log the case(s) on a shared spreadsheet, which our billing department uses to bill the testing to the EPI program, rather than to the submitting facility. 

     

    The accessioning process isn't any different for either type of testing.  We have a web portal where our facilities place their test orders.  We instruct them on which test to order ,depending on the purpose of the testing, in our lab manual which is published on our website and linked in our web portal.  There are "ask on order entry" questions they must answer, which give us information we need, depending on the type of testing. For example, when ordering influenza surveillance, the ordering facility must give their test result and method used, i.e., positive for influenza A by rapid antigen.  For order choices that often get ordered incorrectly, we build rules in the LIS to display a message when they are ordered, giving further guidance as to which test they should be ordering.  If a facility orders the wrong test, our staff can easily change it to the correct test when accessioning the sample.

     

     

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    DEPARTMENT OF

    PUBLIC HEALTH &

    HUMAN SERVICES

     

    Kim Varvel, MLS(ASCP)CM

    Data Coordinator/CLSP

    Laboratory Services Bureau/Public Health Laboratory

    PO Box 4369 | 1400 Broadway | Helena MT 59620-2951

    Desk: 406-444-4115 | Fax: 406-444-5527

    kvarvel@mt.gov